Fast and Accurate Reconstruction Possible

With some 70 billion neurons and hundreds of thousands of kilometers of circuits, the human brain is so complex that, for many years, it seemed impossible to reconstruct the network in detail. Each neuron is linked to about a thousand others by means of finely branched projections called dendrites and axons, and communicates with them using electrical signals. The connections between the cells are critical for brain function, so neuroscientists are keen to understand the structure of these circuits – the connectome – and to reconstruct it in a three-dimensional map. Since no computer is powerful enough yet for the task, researchers are dependent on the human eye. However, the sheer number of cellular connections contained in even the tiniest fragment of tissue makes the undertaking seem pointless – unless it is shared among a large number of people.

Scientists at the Max Planck Institute for Medical Research in Heidelberg have now successfully tested this procedure. They developed a special software tool called RESCOP which summarises the results of several annotators to yield an overall picture. In this way, and with the support of over 70 students from Heidelberg University, they reconstructed a network of over 100 neurons from the retina in full detail. The students used the KNOSSOS software developed by the team in Heidelberg to trace the connections between the neurons.

The KNOSSOS software considerably reduces the time required: It is about 50 times faster than other programs used up to now. In addition, the RESCOP program now makes it possible for dozens of people to work on the reconstruction at the same time. Since the method is easily learned, even non-experts can use it. Most of the students worked from home and sent their results to the scientists via e-mail. The scientists were able to establish that the error rate of the best students was no higher than that of experienced neurobiologists. Moreover, its sophisticated algorithms enable RESCOP to detect and average out inaccuracies. This means that the reconstruction is not only faster, but also more reliable than before.

“For the first time ever, these new programs could make it possible for us to unravel the complicated neural network of the brain – a task far more complex than decoding the human genome”, says Winfried Denk, one of the project managers. Next, the scientists plan to reconstruct a fragment of the mouse cerebral cortex, as this is where all the important mental processes occur.; Source: Max Planck Institute for Medical Research